Evgeniy Petrotchenko: search on Z-Library

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1

Top-down hydrogen-deuterium exchange analysis of protein structures using ultraviolet photodissociation (UVPD)

Brodie, Nicholas I., Huguet, Romain, Zhang, Terry, Viner, Rosa, Zabrouskov, Vlad, Pan, Jingxi, Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 574 KB

english, 2018

2

Crystal structure-based studies of cytosolic sulfotransferase

Kouichi Yoshinari, Evgeniy V. Petrotchenko, Lars C. Pedersen, Masahiko Negishi

Journal:

Journal of Biochemical and Molecular Toxicology

Year:

2001

Language:

english

File:

PDF, 281 KB

english, 2001

3

Crosslinking combined with mass spectrometry for structural proteomics

Evgeniy V. Petrotchenko, Christoph H. Borchers

Journal:

Mass Spectrometry Reviews

Year:

2010

Language:

english

File:

PDF, 375 KB

english, 2010

4

ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite

Evgeniy V Petrotchenko, Christoph H Borchers

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 672 KB

english, 2010

5

Structure and Function of Sulfotransferases

Masahiko Negishi, Lee G. Pedersen, Evgeniy Petrotchenko, Sergei Shevtsov, Anna Gorokhov, Yoshimitsu Kakuta, Lars C. Pedersen

Journal:

Archives of Biochemistry and Biophysics

Year:

2001

Language:

english

File:

PDF, 357 KB

english, 2001

6

Crystal structure of SULT2A3, human hydroxysteroid sulfotransferase

Lars C Pedersen, Evgeniy V Petrotchenko, Masahiko Negishi

Journal:

Year:

2000

Language:

english

File:

PDF, 427 KB

english, 2000

7

The dimerization motif of cytosolic sulfotransferases

Evgeniy V. Petrotchenko, Lars C. Pedersen, Christoph H. Borchers, Kenneth B. Tomer, Masahiko Negishi

Journal:

Year:

2001

Language:

english

File:

PDF, 528 KB

english, 2001

8

Using multiple structural proteomics approaches for the characterization of prion proteins

Serpa, Jason J., Patterson, Aileen P., Pan, Jingxi, Han, Jun, Wishart, David S., Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

9

Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates

Serpa, Jason J., Makepeace, Karl A.T., Borchers, Tristan H., Wishart, David S., Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2014

Language:

english

File:

PDF, 723 KB

english, 2014

10

Crystallographic Analysis of a Hydroxylated Polychlorinated Biphenyl (OH-PCB) Bound to the Catalytic Estrogen Binding Site of Human Estrogen Sulfotransferase

Sergei Shevtsov, Evgeniy V. Petrotchenko, Lars C. Pedersen and Masahiko Negishi

Journal:

Environmental Health Perspectives

Year:

2003

Language:

english

File:

PDF, 1.57 MB

english, 2003

11

14N15N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using 15N metabolically labeled proteins

Petrotchenko, Evgeniy V., Serpa, Jason J., Makepeace, Karl A.T., Brodie, Nicholas I., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

12

Use of a Combination of Isotopically Coded Cross-Linkers and Isotopically Coded N-Terminal Modification Reagents for Selective Identification of Inter-peptide Crosslinks

Petrotchenko, Evgeniy V., Serpa, Jason J., Borchers, Christoph H.

Journal:

Analytical Chemistry

Year:

2010

Language:

english

File:

PDF, 2.07 MB

english, 2010

13

Combining Fluorescence Detection and Mass Spectrometric Analysis for Comprehensive and Quantitative Analysis of Redox-Sensitive Cysteines in Native Membrane Proteins

Petrotchenko, Evgeniy V., Pasek, Dan, Elms, Phillip, Dokholyan, Nikolay V., Meissner, Gerhard, Borchers, Christoph H.

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 523 KB

english, 2006

14

Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data

Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Year:

2014

Language:

english

File:

PDF, 109 KB

english, 2014

15

“Out-Gel” Tryptic Digestion Procedure for Chemical Cross-Linking Studies with Mass Spectrometric Detection

Petrotchenko, Evgeniy V., Serpa, Jason J., Cabecinha, Ashley N., Lesperance, Mary, Borchers, Christoph H.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.19 MB

english, 2014

16

[Advances in Protein Chemistry and Structural Biology] Proteomics in Biomedicine and Pharmacology Volume 95 || Modern Mass Spectrometry-Based Structural Proteomics

Petrotchenko, Evgeniy V.

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

17

Structure of EspB from the ESX-1 Type VII Secretion System and Insights into its Export Mechanism

Solomonson, Matthew, Setiaputra, Dheva, Makepeace, Karl A.T., Lameignere, Emilie, Petrotchenko, Evgeniy V., Conrady, Deborah G., Bergeron, Julien R., Vuckovic, Marija, DiMaio, Frank, Borchers, Christo

Journal:

Year:

2015

Language:

english

File:

PDF, 3.91 MB

english, 2015

18

Comprehensive identification of disulfide bonds using non-specific proteinase K digestion and CID-cleavable crosslinking analysis methodology for Orbitrap LC/ESI-MS/MS data

Makepeace, Karl A.T., Serpa, Jason J., Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Year:

2015

Language:

english

File:

PDF, 865 KB

english, 2015

19

Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure

Brodie, Nicholas I., Makepeace, Karl A.T., Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2015

Language:

english

File:

PDF, 632 KB

english, 2015

20

HDX Match Software for the Data Analysis of Top-Down ECD-FTMS Hydrogen/Deuterium Exchange Experiments

Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2015

Language:

english

File:

PDF, 646 KB

english, 2015

21

Protein unfolding as a switch from self-recognition to high-affinity client binding

Groitl, Bastian, Horowitz, Scott, Makepeace, Karl A. T., Petrotchenko, Evgeniy V., Borchers, Christoph H., Reichmann, Dana, Bardwell, James C. A., Jakob, Ursula

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

22

The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures

Brodie, Nicholas I., Petrotchenko, Evgeniy V., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

23

Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones

Ellard, Katherine, Serpa, Jason J., Petrotchenko, Evgeniy V., Borchers, Christoph H., Ausió, Juan

Journal:

Biochemistry and Biophysics Reports

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

24

Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations

Brodie, Nicholas I., Popov, Konstantin I., Petrotchenko, Evgeniy V., Dokholyan, Nikolay V., Borchers, Christoph H.

Journal:

Science Advances

Year:

2017

Language:

english

File:

PDF, 7.49 MB

english, 2017

25

The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module

Dilworth, David, Upadhyay, Santosh K., Bonnafous, Pierre, Edoo, Amiirah Bibi, Bourbigot, Sarah, Pesek-Jardim, Francy, Gudavicius, Geoff, Serpa, Jason J., Petrotchenko, Evgeniy V., Borchers, Christoph

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 6.89 MB

english, 2017

26

Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations

Makepeace, Karl A.T., Brodie, Nicholas I., Popov, Konstantin I., Gudavicius, Geoff, Nelson, Christopher J., Petrotchenko, Evgeniy V., Dokholyan, Nikolay V., Borchers, Christoph H.

Journal:

Journal of Proteomics

Year:

2020

File:

PDF, 2.99 MB

2020

27

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

Makepeace, Karl A. T., Mohammed, Yassene, Rudashevskaya, Elena L., Petrotchenko, Evgeniy V., VÃ¶gtle, F.-Nora, Meisinger, Chris, Sickmann, Albert, Borchers, Christoph H.

Journal:

Molecular & Cellular Proteomics

Year:

2020

File:

PDF, 7.81 MB

2020